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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
May, 2022
4
February, 2023
1
October, 2022
Available data
3207
bam
3009
bigWig
1680
bed narrowPeak
1532
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
258
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
4
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
157
Homo sapiens
Biosample type
157
tissue
1
cell line
Organ
88
bone element
62
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
158
AMP
Genome assembly (visualization)
1
hg19
Lab
95
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
84
inconsistent ontology term
6
audit script error
organ_slims!
vasculature
lab.title!
Struan F.A. Grant, CHOP
Maike Sander, UCSD
BIOSAMPLE
ASSAY
158 results
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RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
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cell line
MIN6
1
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