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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
368
ChIP-seq
Assay category
368
DNA binding
Target of assay
305
histone
305
histone modification
165
narrow histone mark
140
broad histone mark
58
control
5
transcription factor
Date released
90
May, 2021
85
August, 2017
78
November, 2017
50
May, 2020
49
October, 2019
August, 2021
14
October, 2017
2
February, 2021
Available data
3079
bam
2902
bigWig
1513
bed narrowPeak
1415
tsv
1352
fastq
895
bigBed narrowPeak
368
tagAlign
305
bed broadPeak
268
bigBed broadPeak
255
bed bed3+
153
zippedFastqFolder
104
txt
34
bed bedMethyl
34
bigBed bedMethyl
19
bedpe bed3+
18
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
361
Homo sapiens
Biosample type
238
tissue
96
primary cell
20
in vitro differentiated cells
14
cell line
Organ
118
brain
82
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
6
artery
6
blood vessel
6
heart
vasculature
3
epithelium
1
pituitary gland
Project
284
AMP
84
T1D
Genome assembly (visualization)
226
GRCh38
219
hg19
Lab
284
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
organ_slims!
vasculature
month_released!
April, 2019
August, 2021
BIOSAMPLE
ASSAY
368 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 43 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
in vitro differentiated cells
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
iPSC derived cell line
2
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