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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
256
ChIP-seq
245
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
25
DNase-seq
17
pCHi-C
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
431
Transcription
281
DNA accessibility
256
DNA binding
57
DNA methylation
6
3D chromatin structure
Target of assay
220
histone
220
histone modification
113
broad histone mark
107
narrow histone mark
31
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
51
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
26
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
581
bigWig
574
bam
400
fastq
274
bed narrowPeak
265
tsv
153
zippedFastqFolder
100
tagAlign
88
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
2
hdf5
1
bed bed3
Organism
1048
Homo sapiens
Biosample type
2604
tissue
1048
primary cell
596
cell line
393
in vitro differentiated cells
10
stem cell
Organ
403
epithelium
343
pancreas
39
connective tissue
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
519
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
594
hg19
511
GRCh38
Lab
484
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
53
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vasculature
month_released!
August, 2018
BIOSAMPLE
ASSAY
1048 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
10
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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