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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
193
DNase-seq
60
ChIP-seq
Assay category
193
DNA accessibility
60
DNA binding
Target of assay
45
transcription factor
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
5
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
60
November, 2017
August, 2017
9
November, 2018
3
October, 2019
1
November, 2020
Available data
2925
bam
2735
bigWig
1542
bed narrowPeak
1443
tsv
1058
fastq
917
bigBed narrowPeak
307
tagAlign
264
bed broadPeak
253
bigBed broadPeak
227
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
253
Homo sapiens
Biosample type
171
tissue
59
cell line
23
primary cell
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
vasculature
13
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
253
AMP
Genome assembly (visualization)
239
GRCh38
231
hg19
Lab
253
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
organ_slims!
vasculature
month_released!
August, 2020
August, 2017
BIOSAMPLE
ASSAY
253 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
58
Panc1
1
primary cell
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the hippocampus
1
+ See 12 more…
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