Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
2
DNase-seq
1
WGBS
Assay category
43
DNA binding
9
DNA accessibility
6
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
11
narrow histone mark
Date released
43
October, 2019
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
Available data
56
bam
39
bed narrowPeak
38
bigWig
32
bigBed narrowPeak
6
tsv
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
63
Homo sapiens
Biosample type
63
tissue
Organ
942
pancreas
789
liver
666
connective tissue
504
epithelium
490
adipose tissue
318
heart
273
kidney
256
brain
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
63
AMP
Genome assembly (visualization)
43
GRCh38
43
hg19
Lab
63
AMP-T2D consortium
organ_slims!
vasculature
month_released!
June, 2019
BIOSAMPLE
ASSAY
63 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
DNase-seq
WGBS
tissue
tibial nerve
35
1
5
2
muscle of leg
7
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 5 more…
See all biosamples
Download