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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
29
ATAC-seq
18
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
56
Transcription
47
DNA accessibility
Date released
May, 2021
45
May, 2020
24
May, 2022
23
February, 2023
16
January, 2021
Available data
69
bam
45
bigWig
45
tsv
24
fastq
18
bed narrowPeak
6
txt
Organism
108
Homo sapiens
Biosample type
53
primary cell
50
tissue
5
cell line
Organ
50
pancreas
8
blood
8
bodily fluid
Project
84
T1D
24
AMP
Genome assembly (visualization)
63
hg19
45
GRCh38
Lab
3512
AMP-T2D consortium
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
108
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
organ_slims!
vasculature
month_released!
May, 2021
BIOSAMPLE
ASSAY
108 results
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total RNA-seq
ATAC-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
peripheral blood mononuclear cell
8
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 21 more…
tissue
islet of Langerhans
11
29
6
pancreas
4
cell line
EndoC_BH1
3
2
See all biosamples
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