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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
DNase-seq
105
ChIP-seq
1
ATAC-seq
Assay category
196
DNA accessibility
105
DNA binding
Target of assay
58
histone
58
histone modification
47
transcription factor
32
broad histone mark
26
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
66
November, 2017
41
August, 2017
9
November, 2018
October, 2017
3
October, 2019
1
March, 2019
1
November, 2020
Available data
3192
bam
2960
bigWig
1632
bed narrowPeak
1532
tsv
1335
fastq
953
bigBed narrowPeak
378
tagAlign
301
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
295
Homo sapiens
Biosample type
204
tissue
59
cell line
37
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
46
musculature of body
44
brain
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
301
AMP
Genome assembly (visualization)
278
hg19
263
GRCh38
Lab
300
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
vasculature
month_released!
October, 2017
BIOSAMPLE
ASSAY
301 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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