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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
DNase-seq
73
ChIP-seq
Assay category
192
DNA accessibility
73
DNA binding
Target of assay
47
transcription factor
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
180
June, 2019
60
November, 2017
15
August, 2017
9
November, 2018
October, 2019
1
November, 2020
Available data
3003
bam
2803
bigWig
1516
tsv
1489
bed narrowPeak
1352
fastq
922
bigBed narrowPeak
343
tagAlign
302
bed broadPeak
265
bigBed broadPeak
256
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
tar
2
hdf5
2
ibed
1
bedpe
1
vcf
Organism
265
Homo sapiens
Biosample type
169
tissue
58
cell line
37
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
38
brain
33
musculature of body
32
limb
30
heart
18
epithelium
18
ureter
vasculature
9
connective tissue
7
blood vessel
6
pancreas
4
eye
2
adipose tissue
2
artery
1
spleen
Project
265
AMP
Genome assembly (visualization)
249
GRCh38
243
hg19
Lab
265
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
month_released!
October, 2019
BIOSAMPLE
ASSAY
265 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 35 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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