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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
68
ATAC-seq
34
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
single cell RNA-seq
Assay category
94
Transcription
70
DNA accessibility
34
DNA binding
1
3D chromatin structure
Target of assay
28
transcription factor
4
control
2
RNA binding protein
2
chromatin remodeller
Date released
649
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
111
fastq
60
bed narrowPeak
34
bam
33
bigWig
30
bigBed narrowPeak
16
tsv
10
bed bed3
7
txt
4
bed bed3+
3
bed bedgraph
Organism
204
Homo sapiens
Biosample type
88
primary cell
67
tissue
34
cell line
16
in vitro differentiated cells
Organ
56
pancreas
52
epithelium
36
heart
35
artery
35
blood vessel
vasculature
31
eye
27
blood
27
bodily fluid
14
connective tissue
8
bone element
8
skeleton
7
spleen
1
adipose tissue
1
brain
1
liver
Project
106
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
75
hg19
30
GRCh38
Lab
103
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
1
inconsistent control
organ_slims!
vasculature
BIOSAMPLE
ASSAY
205 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
single cell RNA-seq
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
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tissue
islet of Langerhans
5
11
2
retina
2
15
pigmented layer of retina
2
12
spleen
7
acetabular part of hip bone
1
1
+ See 6 more…
cell line
GM12878
27
EndoC_BH1
3
2
1
HepG2
1
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
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