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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
18
small RNA-seq
14
RRBS
10
WGBS
9
ATAC-seq
6
ChIP-seq
6
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
60
Transcription
24
DNA methylation
11
DNA accessibility
6
3D chromatin structure
6
DNA binding
Target of assay
9
control
Date released
649
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
84
bam
80
bigWig
60
tsv
21
bed bedMethyl
21
bigBed bedMethyl
11
fastq
10
bed narrowPeak
7
bigBed narrowPeak
4
bed bed3+
2
hdf5
Organism
107
Homo sapiens
Biosample type
76
tissue
31
primary cell
Organ
25
heart
18
brain
18
connective tissue
18
epithelium
17
pancreas
12
adipose tissue
vasculature
11
blood vessel
11
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
107
AMP
Genome assembly (visualization)
88
hg19
78
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
107 results
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total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
ChIP-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
1
4
2
islet of Langerhans
1
6
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
+ See 22 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic alpha cell
2
+ See 18 more…
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