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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
DNase-seq
101
ChIP-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
190
DNA accessibility
101
DNA binding
7
DNA methylation
1
Transcription
Target of assay
68
transcription factor
25
RNA binding protein
19
histone
19
histone modification
16
recombinant protein
14
control
11
narrow histone mark
8
broad histone mark
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
649
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
298
bam
283
bigWig
276
bed narrowPeak
276
bigBed narrowPeak
189
bed bed3+
189
bed broadPeak
189
bigBed broadPeak
88
fastq
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
299
Homo sapiens
Biosample type
186
tissue
61
cell line
52
primary cell
Organ
81
kidney
55
liver
43
musculature of body
35
heart
32
brain
32
limb
20
epithelium
19
connective tissue
18
ureter
15
blood
15
bodily fluid
11
pancreas
9
spleen
7
eye
vasculature
5
blood vessel
2
adipose tissue
2
artery
Project
299
AMP
Genome assembly (visualization)
282
GRCh38
252
hg19
Lab
299
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
organ_slims!
vasculature
BIOSAMPLE
ASSAY
299 results
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Clear Filters
DNase-seq
ChIP-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 35 more…
cell line
HepG2
45
1
GM12878
15
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 14 more…
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