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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
DNase-seq
91
ATAC-seq
63
ChIP-seq
52
total RNA-seq
41
WGBS
35
single cell RNA-seq
22
snATAC-seq
Assay category
293
DNA accessibility
87
Transcription
63
DNA binding
41
DNA methylation
Target of assay
51
histone
51
histone modification
26
narrow histone mark
25
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
649
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
307
bam
295
bigWig
287
bed narrowPeak
217
bigBed narrowPeak
181
bed bed3+
180
bed broadPeak
180
bigBed broadPeak
134
zippedFastqFolder
97
fastq
26
tsv
7
txt
1
csv
Organism
484
Homo sapiens
Biosample type
258
primary cell
226
tissue
Organ
180
pancreas
161
epithelium
81
kidney
45
musculature of body
42
liver
35
heart
32
limb
30
brain
18
connective tissue
18
ureter
7
eye
vasculature
5
blood vessel
2
artery
1
adipose tissue
Project
350
AMP
134
HPAP
Genome assembly (visualization)
292
hg19
275
GRCh38
Lab
286
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
25
inconsistent ontology term
1
audit script error
Audit category:
32
missing controlled_by
organ_slims!
vasculature
BIOSAMPLE
ASSAY
484 results
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Clear Filters
DNase-seq
ATAC-seq
ChIP-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
primary cell
pancreatic alpha cell
25
10
25
Langerhans cell
33
21
pancreatic beta cell
17
10
16
pancreatic ductal cell
4
13
4
pancreatic acinar cell
7
8
2
+ See 20 more…
tissue
liver
20
20
islet of Langerhans
18
6
heart
18
muscle of arm
17
kidney
13
+ See 35 more…
See all biosamples
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