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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
212
ChIP-seq
30
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
212
DNA binding
35
DNA accessibility
24
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
185
histone
185
histone modification
115
narrow histone mark
70
broad histone mark
29
control
1
RNA binding protein
1
transcription factor
Date released
86
October, 2019
85
November, 2017
28
June, 2019
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
235
bam
213
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
26
tsv
15
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
276
Homo sapiens
Biosample type
265
tissue
11
primary cell
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
vasculature
230
blood vessel
159
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
276
AMP
Genome assembly (visualization)
211
GRCh38
154
hg19
Lab
276
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
vasculature
artery
BIOSAMPLE
ASSAY
276 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
Hi-C
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 77 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
See all biosamples
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