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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
30
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
167
DNA binding
32
DNA accessibility
12
Transcription
Target of assay
166
histone
166
histone modification
105
narrow histone mark
61
broad histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
78
October, 2019
59
November, 2017
28
June, 2019
25
May, 2019
12
July, 2019
7
October, 2017
2
November, 2018
Available data
209
bam
208
bigWig
195
bed narrowPeak
120
bigBed narrowPeak
82
tagAlign
40
bed broadPeak
32
bigBed broadPeak
30
bed bed3+
12
tsv
11
fastq
1
tagAlign bed3+
Organism
211
Homo sapiens
Biosample type
203
tissue
8
primary cell
Organ
635
pancreas
566
connective tissue
531
liver
424
adipose tissue
294
epithelium
266
heart
217
brain
205
kidney
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
29
embryo
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
211
AMP
Genome assembly (visualization)
211
GRCh38
154
hg19
Lab
211
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
organ_slims!
vasculature
gonad
BIOSAMPLE
ASSAY
211 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
11
14
1
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
caudate nucleus
12
1
+ See 73 more…
primary cell
astrocyte of the cerebellum
2
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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