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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
18
Hi-C
3
pCHi-C
Assay category
64
DNA accessibility
18
3D chromatin structure
Date released
66
August, 2021
10
March, 2020
3
October, 2019
3
October, 2022
2
November, 2019
1
August, 2018
Available data
3207
bam
3014
bigWig
1684
bed narrowPeak
1531
tsv
1352
fastq
959
bigBed narrowPeak
392
tagAlign
305
bed broadPeak
268
bigBed broadPeak
260
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
21
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
3
cool
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
85
Homo sapiens
Biosample type
73
tissue
7
in vitro differentiated cells
3
primary cell
2
cell line
Organ
64
kidney
7
pancreas
5
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
82
AMP
3
HPAP
Genome assembly (visualization)
64
GRCh38
19
hg19
Lab
64
Katalin Susztak, Upenn
16
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
3
audit script error
organ_slims!
vasculature
gonad
BIOSAMPLE
ASSAY
85 results
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ATAC-seq
Hi-C
pCHi-C
tissue
kidney
64
islet of Langerhans
2
psoas muscle
2
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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