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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
860
total RNA-seq
639
ChIP-seq
201
ATAC-seq
169
DNase-seq
167
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
23
pCHi-C
21
WGBS
14
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1040
Transcription
639
DNA binding
402
DNA accessibility
31
DNA methylation
14
3D chromatin structure
Target of assay
469
histone
469
histone modification
247
narrow histone mark
222
broad histone mark
125
control
47
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
544
February, 2021
230
August, 2017
223
August, 2021
210
October, 2019
160
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
65
May, 2019
62
July, 2019
60
February, 2023
47
September, 2023
40
May, 2021
40
November, 2019
34
March, 2020
26
May, 2022
23
October, 2017
21
February, 2020
19
April, 2020
19
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1532
bam
1397
bigWig
908
tsv
731
bed narrowPeak
450
bigBed narrowPeak
294
fastq
205
bed broadPeak
194
bed bed3+
168
bigBed broadPeak
168
tagAlign
157
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
9
hic
8
bedpe bed3+
5
bed bed3
5
csv
1
bedpe
1
tagAlign bed3+
Organism
2234
Homo sapiens
Biosample type
2243
tissue
1038
primary cell
379
in vitro differentiated cells
195
cell line
10
stem cell
Organ
547
connective tissue
505
pancreas
488
adipose tissue
liver
299
kidney
273
heart
265
brain
158
bone element
133
blood vessel
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2146
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1476
GRCh38
1417
hg19
Lab
1971
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
organ_slims!
vasculature
liver
BIOSAMPLE
ASSAY
2243 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
71
68
1
7
4
3
1
1
4
adipose tissue
382
2
3
1
3
kidney
49
27
75
13
64
6
1
1
1
bone element
84
heart left ventricle
3
35
2
3
18
1
4
1
1
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