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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
186
ChIP-seq
164
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
25
DNase-seq
17
pCHi-C
9
RRBS
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
279
Transcription
210
DNA accessibility
186
DNA binding
10
DNA methylation
3
3D chromatin structure
Target of assay
162
histone
162
histone modification
86
broad histone mark
76
narrow histone mark
19
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
51
June, 2019
42
February, 2021
40
September, 2020
26
July, 2019
18
August, 2017
13
October, 2019
11
July, 2018
10
April, 2018
8
January, 2021
6
November, 2020
5
December, 2019
5
May, 2019
4
August, 2021
3
November, 2017
2
June, 2018
1
March, 2023
1
November, 2018
1
September, 2018
Available data
392
bigWig
383
bam
206
bed narrowPeak
160
tsv
145
fastq
100
tagAlign
73
zippedFastqFolder
66
bigBed narrowPeak
37
bed broadPeak
37
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
705
Homo sapiens
Biosample type
2139
tissue
705
primary cell
504
cell line
391
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
pancreas
39
connective tissue
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
328
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
412
hg19
322
GRCh38
Lab
293
AMP-T2D consortium
239
Kyle Gaulton, UCSD
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
48
inconsistent ontology term
27
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
vasculature
pancreas
BIOSAMPLE
ASSAY
705 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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