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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
202
ChIP-seq
10
single cell RNA-seq
9
WGBS
6
RRBS
4
DNase-seq
2
ATAC-seq
Assay category
202
DNA binding
15
DNA methylation
10
Transcription
6
DNA accessibility
Target of assay
133
histone modification
132
histone
77
broad histone mark
54
narrow histone mark
40
transcription factor
29
control
6
RNA binding protein
3
chromatin remodeller
Date released
617
February, 2021
400
November, 2017
341
May, 2020
338
May, 2021
309
August, 2021
249
October, 2019
223
August, 2017
207
June, 2019
114
February, 2023
96
May, 2022
94
December, 2017
90
July, 2019
81
November, 2018
80
April, 2019
68
May, 2019
47
September, 2023
46
March, 2020
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2018
21
February, 2020
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
10
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
129
fastq
124
bam
123
bigWig
93
bed narrowPeak
69
tagAlign
29
bed broadPeak
25
bigBed narrowPeak
15
bigBed broadPeak
14
bed bed3+
10
tsv
6
bed bedMethyl
6
bigBed bedMethyl
Organism
233
Homo sapiens
Biosample type
137
tissue
68
in vitro differentiated cells
28
primary cell
Organ
pancreas
127
connective tissue
62
epithelium
57
adipose tissue
54
liver
26
musculature of body
Project
233
AMP
Genome assembly (visualization)
127
hg19
107
GRCh38
Lab
233
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
8
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vasculature
pancreas
BIOSAMPLE
ASSAY
233 results
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ChIP-seq
single cell RNA-seq
WGBS
RRBS
DNase-seq
ATAC-seq
tissue
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
white adipose tissue
12
adipose tissue
2
3
+ See 2 more…
in vitro differentiated cells
adipocyte
67
1
primary cell
skeletal muscle myoblast
15
1
2
mesenchymal cell
5
pancreatic cell
3
enteroendocrine cell
2
See all biosamples
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