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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
34
DNase-seq
20
total RNA-seq
7
ATAC-seq
4
Hi-C
1
GRO-seq
1
WGBS
Assay category
65
DNA binding
41
DNA accessibility
20
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
43
histone
43
histone modification
24
broad histone mark
19
control
19
narrow histone mark
3
transcription factor
Date released
43
October, 2019
32
June, 2019
13
December, 2017
13
February, 2018
8
August, 2021
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
2
May, 2021
1
January, 2018
Available data
124
bam
99
bigWig
85
bed narrowPeak
64
bigBed narrowPeak
37
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
27
fastq
20
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
132
Homo sapiens
Biosample type
95
tissue
29
in vitro differentiated cells
8
cell line
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
132
AMP
Genome assembly (visualization)
104
GRCh38
104
hg19
1
hg18
Lab
132
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
organ_slims!
vasculature
vein
BIOSAMPLE
ASSAY
132 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
GRO-seq
WGBS
tissue
tibial nerve
35
2
5
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
distal epiphysis of femur
1
+ See 8 more…
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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