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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
28
DNase-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
123
DNA binding
111
Transcription
31
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
16
control
12
transcription factor
10
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
33
June, 2019
22
July, 2019
16
May, 2019
8
October, 2019
7
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
160
bigWig
138
bed narrowPeak
135
bam
113
tsv
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
281
Homo sapiens
Biosample type
269
tissue
11
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
281
AMP
Genome assembly (visualization)
159
GRCh38
116
hg19
Lab
241
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
organ_slims!
vasculature
vein
BIOSAMPLE
ASSAY
281 results
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ChIP-seq
single cell RNA-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
3
4
2
1
1
1
left cardiac atrium
40
18
1
heart
14
1
18
4
1
1
1
heart right ventricle
13
17
1
1
2
1
1
right cardiac atrium
6
18
1
1
+ See 9 more…
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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