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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
50
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
435
bam
417
bigWig
401
tsv
38
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
1
bed broadPeak
1
bedpe bed3+
Organism
476
Homo sapiens
Biosample type
474
tissue
2
primary cell
1
in vitro differentiated cells
Organ
757
liver
722
pancreas
644
connective tissue
477
adipose tissue
354
epithelium
308
heart
249
brain
191
kidney
vasculature
172
blood vessel
147
bone element
92
artery
77
limb
60
blood
60
bodily fluid
60
musculature of body
40
nerve
37
embryo
29
eye
21
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
477
AMP
Genome assembly (visualization)
418
hg19
417
GRCh38
Lab
477
AMP-T2D consortium
Audit category:
12
missing controlled_by
organ_slims!
vasculature
assay_title!
WGBS
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
477 results
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total RNA-seq
ChIP-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
1
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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