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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
196
ChIP-seq
93
single cell RNA-seq
30
DNase-seq
6
ATAC-seq
6
WGBS
5
pCHi-C
3
Hi-C
1
RNA microarray
Assay category
491
Transcription
196
DNA binding
36
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
127
histone
127
histone modification
77
broad histone mark
50
narrow histone mark
40
control
29
transcription factor
15
RNA binding protein
Date released
386
February, 2021
93
August, 2021
57
April, 2019
57
August, 2017
40
May, 2024
July, 2019
34
June, 2019
23
October, 2018
16
May, 2019
9
October, 2019
8
March, 2020
4
February, 2020
3
May, 2021
2
February, 2023
1
August, 2018
1
January, 2018
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
555
bigWig
547
bam
493
tsv
148
bed narrowPeak
99
bigBed narrowPeak
44
fastq
34
bed bed3+
31
bed broadPeak
30
bigBed broadPeak
8
tagAlign
4
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
Organism
737
Homo sapiens
Biosample type
728
tissue
8
primary cell
2
in vitro differentiated cells
Organ
940
pancreas
781
liver
666
connective tissue
511
epithelium
479
adipose tissue
368
heart
343
kidney
268
brain
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
738
AMP
Genome assembly (visualization)
553
GRCh38
516
hg19
Lab
698
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
vasculature
month_released!
July, 2019
BIOSAMPLE
ASSAY
738 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
heart left ventricle
1
35
18
3
1
1
left cardiac atrium
40
18
1
subcutaneous abdominal adipose tissue
36
3
heart
2
14
1
18
1
+ See 16 more…
primary cell
cardiac fibroblast
5
3
in vitro differentiated cells
cardiac fibroblast
1
white fat cell
1
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