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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
399
total RNA-seq
81
ChIP-seq
34
DNase-seq
12
ATAC-seq
7
WGBS
4
Hi-C
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
402
Transcription
81
DNA binding
46
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
39
histone
39
histone modification
25
control
24
broad histone mark
17
transcription factor
15
narrow histone mark
5
RNA binding protein
Date released
392
February, 2021
57
August, 2017
33
June, 2019
23
October, 2018
17
July, 2019
7
May, 2019
3
February, 2020
2
October, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
488
bam
464
bigWig
402
tsv
57
bed narrowPeak
48
bigBed narrowPeak
44
fastq
38
bed bed3+
35
bed broadPeak
34
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
542
Homo sapiens
Biosample type
540
tissue
2
primary cell
1
in vitro differentiated cells
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
543
AMP
Genome assembly (visualization)
470
hg19
468
GRCh38
Lab
543
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
vasculature
nerve
BIOSAMPLE
ASSAY
543 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
muscle of leg
7
13
1
omental fat pad
5
11
2
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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