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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
30
DNase-seq
1
FAIRE-seq
Assay category
90
DNA binding
31
DNA accessibility
Target of assay
89
histone
89
histone modification
58
broad histone mark
31
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
59
November, 2017
28
June, 2019
25
May, 2019
6
October, 2017
2
November, 2018
1
July, 2019
Available data
235
bam
213
bigWig
197
bed narrowPeak
121
bigBed narrowPeak
118
tagAlign
41
bed broadPeak
32
bed bed3+
32
bigBed broadPeak
27
tsv
15
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
121
Homo sapiens
Biosample type
116
tissue
5
primary cell
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
0
stomach
Project
121
AMP
Genome assembly (visualization)
120
GRCh38
59
hg19
Lab
121
AMP-T2D consortium
Audit category:
3
missing controlled_by
organ_slims!
vasculature
BIOSAMPLE
ASSAY
121 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
6
14
layer of hippocampus
16
caudate nucleus
12
1
temporal lobe
13
angular gyrus
12
+ See 14 more…
primary cell
astrocyte of the cerebellum
2
1
astrocyte of the hippocampus
1
brain pericyte
1
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