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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
4
ATAC-seq
3
single cell RNA-seq
2
RNA microarray
1
Hi-C
Assay category
8
Transcription
4
DNA accessibility
1
3D chromatin structure
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
68
October, 2019
60
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
16
November, 2020
15
February, 2018
15
May, 2023
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
9
tsv
6
bam
5
bigWig
1
bed broadPeak
1
bedpe
1
fastq
1
hic
Organism
15
Homo sapiens
Biosample type
8
tissue
5
primary cell
2
in vitro differentiated cells
Organ
6
epithelium
5
liver
5
pancreas
3
kidney
Project
15
AMP
Genome assembly (visualization)
8
hg19
7
GRCh38
Lab
10
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
4
audit script error
2
inconsistent ontology term
organ_slims!
vein
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
15 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
RNA microarray
Hi-C
tissue
islet of Langerhans
4
1
kidney
1
kidney interstitium
1
renal glomerulus
1
primary cell
hepatocyte
5
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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