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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
Hi-C
Assay category
32
3D chromatin structure
Date released
9
March, 2020
8
July, 2019
4
October, 2019
3
August, 2021
3
October, 2022
2
November, 2019
1
December, 2018
1
March, 2019
1
March, 2023
Available data
21
hic
19
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
bedpe
1
fastq
Organism
32
Homo sapiens
Biosample type
16
tissue
8
primary cell
4
cell line
4
in vitro differentiated cells
Organ
9
pancreas
8
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
3
brain
3
heart
vein
1
connective tissue
1
kidney
Project
28
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
25
hg19
2
GRCh38
Lab
24
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
3
audit script error
Audit category:
1
inconsistent assembly
organ_slims!
vein
BIOSAMPLE
ASSAY
32 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
cell line
HepG2
2
EndoC_BH1
1
Panc1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
See all biosamples
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