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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
Hi-C
Assay category
1803
Transcription
1330
DNA binding
798
DNA accessibility
96
DNA methylation
28
3D chromatin structure
Date released
9
March, 2020
8
July, 2019
3
October, 2019
3
October, 2022
2
August, 2021
1
March, 2019
1
March, 2023
1
November, 2019
Available data
19
hic
17
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
Organism
28
Homo sapiens
Biosample type
16
tissue
8
primary cell
cell line
4
in vitro differentiated cells
Organ
7
epithelium
7
pancreas
6
musculature of body
5
blood vessel
5
vasculature
4
limb
3
brain
3
heart
2
liver
vein
1
connective tissue
1
kidney
Project
24
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
22
hg19
1
GRCh38
Lab
21
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
3
audit script error
organ_slims!
vein
biosample_type!
cell line
BIOSAMPLE
ASSAY
28 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
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