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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1636
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
202
DNase-seq
87
RNA microarray
73
snATAC-seq
56
pCHi-C
24
WGBS
23
Hi-C
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
202
DNA accessibility
1
DNA sequencing
Date released
183
June, 2019
7
November, 2018
7
October, 2019
4
August, 2017
1
August, 2021
1
November, 2020
Available data
199
bam
199
bed narrowPeak
199
bigBed narrowPeak
199
bigWig
197
bed broadPeak
197
bigBed broadPeak
195
bed bed3+
9
fastq
1
vcf
Organism
203
Homo sapiens
Biosample type
171
tissue
29
primary cell
2
cell line
1
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
pancreas
7
liver
4
artery
4
eye
2
adipose tissue
2
nerve
vein
1
spleen
Project
203
AMP
Genome assembly (visualization)
197
GRCh38
178
hg19
Lab
202
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
organ_slims!
vein
pancreas
BIOSAMPLE
ASSAY
203 results
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DNase-seq
whole genome sequencing assay
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
+ See 17 more…
cell line
HepG2
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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