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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
ChIP-seq
150
total RNA-seq
100
single cell RNA-seq
49
ATAC-seq
25
DNase-seq
2
small RNA-seq
1
Hi-C
Assay category
252
Transcription
197
DNA binding
74
DNA accessibility
1
3D chromatin structure
Target of assay
188
histone
188
histone modification
97
narrow histone mark
91
broad histone mark
9
RNA binding protein
9
transcription factor
3
control
1
chromatin remodeller
Date released
149
May, 2021
72
September, 2018
48
July, 2018
47
June, 2019
45
May, 2020
43
April, 2018
42
August, 2017
18
July, 2019
10
October, 2019
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
1
March, 2023
Available data
513
bam
507
bigWig
252
tsv
249
bed narrowPeak
229
fastq
98
tagAlign
93
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
28
bed bed3+
1
bed bed3
1
hic
Organism
524
Homo sapiens
Biosample type
1819
tissue
524
primary cell
464
cell line
265
in vitro differentiated cells
3
stem cell
Organ
225
epithelium
192
pancreas
32
connective tissue
28
kidney
22
vasculature
18
blood vessel
14
brain
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
333
AMP
180
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
611
hg19
524
GRCh38
Lab
333
AMP-T2D consortium
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
ITG
Audit category:
36
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vein
BIOSAMPLE
ASSAY
524 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
small RNA-seq
Hi-C
primary cell
monocyte
84
53
13
pancreatic alpha cell
7
10
12
13
pancreatic beta cell
7
10
12
10
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
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