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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ATAC-seq
2
ChIP-seq
2
Hi-C
1
total RNA-seq
Assay category
123
DNA accessibility
2
3D chromatin structure
2
DNA binding
1
Transcription
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
64
August, 2021
35
February, 2023
12
May, 2023
7
August, 2020
3
October, 2019
3
September, 2020
2
March, 2019
1
March, 2023
1
October, 2017
Available data
bam
2878
bigWig
1580
bed narrowPeak
1400
tsv
986
bigBed narrowPeak
951
fastq
280
bed broadPeak
265
bigBed broadPeak
256
bed bed3+
246
tagAlign
64
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
128
Homo sapiens
Biosample type
116
tissue
11
primary cell
1
cell line
Organ
75
kidney
35
artery
35
blood vessel
35
heart
35
vasculature
14
pancreas
10
epithelium
2
brain
1
adipose tissue
1
connective tissue
Project
117
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
213
hg19
128
GRCh38
5
hg18
Lab
75
Katalin Susztak, Upenn
39
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent assembly
organ_slims!
vein
files.file_type!
bam
BIOSAMPLE
ASSAY
128 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
tissue
kidney
75
coronary artery
35
islet of Langerhans
3
adipose tissue
1
dorsal plus ventral thalamus
1
+ See 1 more…
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
chondrocytes
1
cell line
Panc1
1
See all biosamples
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