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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
152
total RNA-seq
100
single cell RNA-seq
84
ATAC-seq
20
DNase-seq
10
RRBS
7
Hi-C
2
small RNA-seq
1
pCHi-C
Assay category
254
Transcription
235
DNA binding
104
DNA accessibility
10
DNA methylation
7
3D chromatin structure
Target of assay
218
histone
218
histone modification
111
broad histone mark
107
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
184
May, 2021
90
May, 2020
72
September, 2018
48
July, 2018
47
August, 2017
43
April, 2018
40
June, 2019
31
July, 2019
10
October, 2019
9
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
3
October, 2022
2
October, 2018
Available data
581
bigWig
559
bam
275
bed narrowPeak
252
tsv
226
fastq
99
tagAlign
89
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
28
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
bedpe bed3+
3
cool
3
hic
1
bed bed3
Organism
611
Homo sapiens
Biosample type
1755
tissue
611
primary cell
530
cell line
297
in vitro differentiated cells
3
stem cell
Organ
227
epithelium
185
pancreas
34
connective tissue
31
vasculature
25
blood vessel
25
kidney
21
brain
vein
13
liver
12
musculature of body
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
428
AMP
180
T1D
3
HPAP
Genome assembly (visualization)
611
hg19
524
GRCh38
Lab
393
AMP-T2D consortium
215
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
42
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vein
BIOSAMPLE
ASSAY
611 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
pCHi-C
primary cell
monocyte
84
53
15
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
7
1
pancreatic alpha cell
7
10
12
6
1
pancreatic ductal cell
13
4
10
4
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