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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
235
ChIP-seq
152
total RNA-seq
100
single cell RNA-seq
ATAC-seq
20
DNase-seq
10
RRBS
7
Hi-C
2
small RNA-seq
1
pCHi-C
Assay category
254
Transcription
235
DNA binding
20
DNA accessibility
10
DNA methylation
7
3D chromatin structure
Target of assay
218
histone
218
histone modification
111
broad histone mark
107
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
171
May, 2021
58
September, 2018
48
July, 2018
45
May, 2020
44
August, 2017
43
April, 2018
40
June, 2019
31
July, 2019
9
November, 2017
8
October, 2019
5
December, 2019
5
November, 2020
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
3
October, 2022
2
February, 2021
2
October, 2018
Available data
513
bigWig
475
bam
252
tsv
236
bed narrowPeak
204
fastq
99
tagAlign
67
bigBed narrowPeak
38
bed broadPeak
38
bigBed broadPeak
28
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
bedpe bed3+
3
cool
3
hic
Organism
527
Homo sapiens
Biosample type
1633
tissue
527
primary cell
517
cell line
255
in vitro differentiated cells
3
stem cell
Organ
204
epithelium
163
pancreas
32
connective tissue
31
vasculature
25
blood vessel
25
kidney
21
brain
vein
12
liver
12
musculature of body
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
344
AMP
180
T1D
3
HPAP
Genome assembly (visualization)
527
hg19
475
GRCh38
Lab
309
AMP-T2D consortium
215
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
36
inconsistent ontology term
3
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vein
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
527 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
pCHi-C
primary cell
monocyte
84
53
CD8-positive, alpha-beta T cell
33
4
pancreatic alpha cell
7
10
12
1
pancreatic beta cell
7
10
12
1
pancreatic ductal cell
13
4
10
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