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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
196
ChIP-seq
168
DNase-seq
89
total RNA-seq
5
ATAC-seq
4
RRBS
1
FAIRE-seq
Assay category
196
DNA binding
174
DNA accessibility
89
Transcription
4
DNA methylation
Target of assay
142
histone modification
141
histone
71
narrow histone mark
69
broad histone mark
51
transcription factor
12
RNA binding protein
3
chromatin remodeller
3
control
Date released
574
February, 2021
316
May, 2021
281
November, 2017
276
August, 2017
260
May, 2020
201
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
31
February, 2018
31
March, 2020
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
457
bigWig
439
bam
329
bed narrowPeak
255
fastq
229
bigBed narrowPeak
205
bed broadPeak
197
bed bed3+
179
bigBed broadPeak
89
tsv
38
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
Organism
457
Homo sapiens
Biosample type
327
tissue
87
primary cell
49
in vitro differentiated cells
Organ
161
pancreas
78
connective tissue
73
kidney
56
musculature of body
32
limb
30
heart
29
epithelium
22
liver
20
brain
18
ureter
16
adipose tissue
6
eye
6
vasculature
4
blood vessel
2
artery
Project
463
AMP
Genome assembly (visualization)
463
hg19
459
GRCh38
Lab
463
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vein
BIOSAMPLE
ASSAY
463 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
27
1
89
1
liver
18
1
muscle of arm
17
heart
16
skeletal muscle tissue
13
2
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primary cell
skeletal muscle myoblast
15
2
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
skeletal muscle satellite cell
7
+ See 18 more…
in vitro differentiated cells
adipocyte
48
1
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