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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
Hi-C
3
pCHi-C
Assay category
13
3D chromatin structure
Date released
11
March, 2020
October, 2019
2
August, 2021
2
November, 2019
1
August, 2018
Available data
3142
bam
2952
bigWig
1628
bed narrowPeak
1578
tsv
1189
fastq
972
bigBed narrowPeak
349
tagAlign
313
bed broadPeak
276
bigBed broadPeak
265
bed bed3+
161
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
16
bedpe bed3+
15
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
tar
2
ibed
1
bedpe
1
vcf
Organism
16
Homo sapiens
Biosample type
9
tissue
5
in vitro differentiated cells
2
cell line
Organ
4
pancreas
2
blood vessel
2
epithelium
2
heart
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
vein
Project
16
AMP
HPAP
Genome assembly (visualization)
14
hg19
Lab
14
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
organ_slims!
vein
award.project!
HPAP
month_released!
October, 2019
BIOSAMPLE
ASSAY
16 results
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Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
white fat cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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