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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
170
ChIP-seq
22
ATAC-seq
6
DNase-seq
4
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
170
DNA binding
28
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
85
histone modification
84
histone
51
narrow histone mark
48
control
41
transcription factor
33
broad histone mark
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
59
December, 2017
54
August, 2017
40
May, 2022
10
July, 2019
7
November, 2018
7
October, 2019
5
December, 2019
4
August, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
311
bam
286
bigWig
159
tsv
129
bed narrowPeak
94
fastq
74
tagAlign
61
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
386
Homo sapiens
Biosample type
359
tissue
cell line
14
primary cell
13
in vitro differentiated cells
Organ
846
pancreas
674
connective tissue
486
adipose tissue
438
epithelium
386
liver
332
kidney
316
heart
283
brain
165
vasculature
160
blood vessel
159
bone element
122
limb
96
musculature of body
74
artery
60
eye
43
nerve
29
embryo
25
spleen
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
386
AMP
Genome assembly (visualization)
291
hg19
259
GRCh38
Lab
346
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
organ_slims!
vein
biosample_type!
cell line
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
386 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
144
20
2
3
1
1
1
1
1
right lobe of liver
3
9
1
2
1
2
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
13
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