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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
single cell RNA-seq
58
ChIP-seq
40
total RNA-seq
32
ATAC-seq
14
DNase-seq
2
Hi-C
Assay category
110
Transcription
58
DNA binding
46
DNA accessibility
2
3D chromatin structure
Target of assay
51
histone
51
histone modification
29
narrow histone mark
22
broad histone mark
5
RNA binding protein
5
transcription factor
2
control
Date released
61
September, 2018
33
April, 2018
33
July, 2018
18
June, 2019
17
August, 2017
8
October, 2019
7
August, 2020
7
July, 2019
6
November, 2017
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
September, 2020
2
October, 2018
1
June, 2018
Available data
238
fastq
222
bam
216
bigWig
116
tsv
93
bed narrowPeak
80
zippedFastqFolder
48
bigBed narrowPeak
19
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
tagAlign
3
bedpe bed3+
3
cool
3
hic
2
hdf5
Organism
216
Homo sapiens
Biosample type
216
primary cell
50
cell line
20
in vitro differentiated cells
Organ
231
epithelium
192
pancreas
32
connective tissue
29
vasculature
28
kidney
24
blood vessel
20
brain
vein
11
liver
11
musculature of body
10
heart
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
206
AMP
10
HPAP
Genome assembly (visualization)
212
GRCh38
200
hg19
Lab
206
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
organ_slims!
vein
BIOSAMPLE
ASSAY
216 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
primary cell
pancreatic alpha cell
12
7
10
13
pancreatic beta cell
12
7
10
10
pancreatic ductal cell
10
13
4
4
pancreatic acinar cell
12
8
4
5
pancreatic delta cell
11
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