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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
total RNA-seq
100
single cell RNA-seq
78
ATAC-seq
27
DNase-seq
17
ChIP-seq
4
Hi-C
2
small RNA-seq
Assay category
254
Transcription
105
DNA accessibility
17
DNA binding
4
3D chromatin structure
Target of assay
218
histone
histone modification
111
broad histone mark
107
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
90
May, 2020
57
May, 2021
48
July, 2018
43
April, 2018
40
September, 2018
28
June, 2019
22
July, 2019
8
August, 2017
7
August, 2020
6
November, 2017
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
September, 2020
2
February, 2021
2
October, 2018
2
October, 2019
1
May, 2019
Available data
401
bam
380
bigWig
336
fastq
270
tsv
153
zippedFastqFolder
76
bed narrowPeak
59
bigBed narrowPeak
32
bed bed3+
31
bed broadPeak
31
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
2
tagAlign
1
bed bed3
Organism
380
Homo sapiens
Biosample type
1250
tissue
485
cell line
380
primary cell
181
in vitro differentiated cells
1
stem cell
Organ
168
epithelium
134
pancreas
24
connective tissue
18
kidney
17
brain
15
vasculature
11
blood vessel
8
heart
8
liver
3
musculature of body
vein
2
adipose tissue
2
artery
2
eye
1
pericardium
Project
274
AMP
96
T1D
10
HPAP
Genome assembly (visualization)
363
hg19
319
GRCh38
Lab
269
AMP-T2D consortium
101
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
Audit category:
21
inconsistent ontology term
organ_slims!
vein
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
380 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
ChIP-seq
Hi-C
small RNA-seq
primary cell
monocyte
53
2
pancreatic alpha cell
10
12
13
pancreatic beta cell
10
12
10
pancreatic acinar cell
4
12
5
pancreatic ductal cell
4
10
4
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