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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ChIP-seq
27
DNase-seq
22
ATAC-seq
Assay category
136
DNA binding
49
DNA accessibility
Target of assay
124
histone
124
histone modification
63
narrow histone mark
61
broad histone mark
10
RNA binding protein
10
transcription factor
2
control
1
chromatin remodeller
Date released
84
May, 2021
47
June, 2019
20
August, 2017
14
September, 2018
6
November, 2017
5
September, 2017
4
August, 2021
4
May, 2019
1
November, 2020
Available data
598
bigWig
589
bam
409
fastq
282
bed narrowPeak
270
tsv
153
zippedFastqFolder
100
tagAlign
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
35
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
Organism
185
Homo sapiens
Biosample type
742
tissue
366
cell line
185
primary cell
57
in vitro differentiated cells
Organ
65
epithelium
22
pancreas
21
vasculature
17
blood vessel
16
kidney
15
connective tissue
vein
11
brain
9
musculature of body
6
heart
6
liver
3
eye
Project
101
AMP
84
T1D
Genome assembly (visualization)
180
GRCh38
177
hg19
Lab
101
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
23
inconsistent ontology term
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
vein
BIOSAMPLE
ASSAY
185 results
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ChIP-seq
DNase-seq
ATAC-seq
primary cell
monocyte
84
skeletal muscle myoblast
15
2
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
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