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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
253
ChIP-seq
247
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
24
DNase-seq
16
pCHi-C
9
RRBS
5
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
433
Transcription
280
DNA accessibility
253
DNA binding
57
DNA methylation
5
3D chromatin structure
Target of assay
219
histone
219
histone modification
113
broad histone mark
106
narrow histone mark
27
control
7
RNA binding protein
7
transcription factor
1
chromatin remodeller
Date released
205
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
50
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
24
July, 2019
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
1
November, 2018
Available data
578
bigWig
572
bam
400
fastq
271
bed narrowPeak
267
tsv
153
zippedFastqFolder
100
tagAlign
85
bigBed narrowPeak
34
bed broadPeak
34
bigBed broadPeak
27
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
4
hic
3
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
hdf5
Organism
1044
Homo sapiens
Biosample type
2512
tissue
1044
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
vein
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
bone marrow
1
pericardium
Project
516
AMP
324
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
590
hg19
510
GRCh38
Lab
481
AMP-T2D consortium
324
Klaus Kaestner, Upenn
238
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
organ_slims!
vein
brain
bone marrow
BIOSAMPLE
ASSAY
1044 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
1
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