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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
total RNA-seq
75
ChIP-seq
72
ATAC-seq
70
single cell RNA-seq
47
WGBS
16
DNase-seq
6
RRBS
5
Hi-C
Assay category
163
Transcription
88
DNA accessibility
75
DNA binding
53
DNA methylation
5
3D chromatin structure
Target of assay
51
histone
51
histone modification
29
narrow histone mark
22
broad histone mark
19
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
61
September, 2018
37
February, 2023
33
April, 2018
33
July, 2018
29
August, 2017
20
June, 2019
19
September, 2020
13
July, 2019
12
October, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
2
October, 2018
1
June, 2018
Available data
238
fastq
222
bam
216
bigWig
116
tsv
93
bed narrowPeak
80
zippedFastqFolder
48
bigBed narrowPeak
19
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
tagAlign
3
bedpe bed3+
3
cool
3
hic
2
hdf5
Organism
384
Homo sapiens
Biosample type
384
primary cell
79
cell line
24
in vitro differentiated cells
15
tissue
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
232
AMP
152
HPAP
Genome assembly (visualization)
213
GRCh38
210
hg19
Lab
232
AMP-T2D consortium
152
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
3
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
organ_slims!
vein
organ_slims!!
vein
BIOSAMPLE
ASSAY
384 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
RRBS
Hi-C
primary cell
pancreatic alpha cell
52
13
35
12
31
1
pancreatic beta cell
21
13
23
12
16
1
pancreatic acinar cell
4
8
9
12
1
pancreatic ductal cell
4
13
4
10
epithelial cell of proximal tubule
1
10
1
1
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