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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
934
total RNA-seq
661
ChIP-seq
231
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
17
WGBS
16
Hi-C
16
small RNA-seq
8
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
1
DNase-seq
Assay category
1124
Transcription
661
DNA binding
262
DNA accessibility
25
DNA methylation
16
3D chromatin structure
Target of assay
528
histone
528
histone modification
284
narrow histone mark
244
broad histone mark
120
control
15
transcription factor
13
RNA binding protein
2
nucleotide modification
Date released
545
February, 2021
238
October, 2019
229
August, 2021
193
May, 2020
118
July, 2018
115
May, 2019
95
February, 2023
89
August, 2017
80
April, 2019
77
July, 2019
76
November, 2017
47
September, 2023
42
May, 2022
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
25
February, 2020
19
April, 2020
16
October, 2018
15
May, 2023
8
January, 2021
6
October, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
fastq
238
tagAlign
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2205
Homo sapiens
Biosample type
2207
tissue
632
primary cell
253
in vitro differentiated cells
234
cell line
6
stem cell
Organ
502
connective tissue
443
adipose tissue
286
heart
282
pancreas
278
liver
231
kidney
222
brain
158
bone element
128
blood vessel
128
vasculature
86
limb
69
artery
53
eye
41
nerve
35
musculature of body
20
lung
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
2110
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1407
GRCh38
1284
hg19
Lab
1881
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
28
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
90
inconsistent ontology term
9
audit script error
organ_slims!
vein
files.file_type!
bed broadPeak
fastq
BIOSAMPLE
ASSAY
2207 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
MeRIP-seq
snDrop-seq
FAIRE-seq
DNase-seq
tissue
adipose tissue
382
3
1
islet of Langerhans
195
37
48
7
4
3
1
4
liver
167
78
20
1
1
2
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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