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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
560
ChIP-seq
208
ATAC-seq
4
FAIRE-seq
1
DNase-seq
Assay category
560
DNA binding
213
DNA accessibility
Target of assay
485
histone modification
484
histone
251
narrow histone mark
233
broad histone mark
75
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
147
October, 2019
93
May, 2019
65
April, 2019
64
August, 2021
63
February, 2023
52
November, 2017
45
October, 2018
40
August, 2017
40
May, 2024
38
May, 2022
36
December, 2017
27
May, 2020
20
November, 2019
9
October, 2017
8
February, 2021
8
November, 2018
7
July, 2019
6
January, 2019
3
December, 2018
2
March, 2020
Available data
1907
bam
1772
bigWig
1076
tsv
984
bed narrowPeak
561
bigBed narrowPeak
377
fastq
238
tagAlign
bed broadPeak
205
bed bed3+
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
773
Homo sapiens
Biosample type
773
tissue
351
cell line
237
primary cell
131
in vitro differentiated cells
2
stem cell
Organ
156
brain
146
heart
110
liver
105
pancreas
95
blood vessel
95
vasculature
85
kidney
58
artery
56
limb
27
eye
25
nerve
13
spleen
12
epithelium
10
adipose tissue
10
connective tissue
8
bone element
8
skeleton
6
musculature of body
1
pituitary gland
Project
771
AMP
2
T1D
Genome assembly (visualization)
693
GRCh38
582
hg19
Lab
631
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
organ_slims!
vein
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
773 results
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Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
DNase-seq
tissue
liver
82
20
kidney
20
64
1
islet of Langerhans
14
37
1
1
left cardiac atrium
40
coronary artery
3
36
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