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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
ChIP-seq
136
total RNA-seq
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
179
DNA binding
138
Transcription
4
3D chromatin structure
1
DNA accessibility
Target of assay
104
histone
104
histone modification
52
broad histone mark
51
narrow histone mark
43
transcription factor
32
control
11
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
61
August, 2017
39
February, 2018
31
December, 2017
28
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
274
bam
247
bigWig
141
fastq
131
tsv
111
bed narrowPeak
40
tagAlign
bed bed3+
15
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
331
Homo sapiens
Biosample type
2312
tissue
831
primary cell
630
cell line
331
in vitro differentiated cells
7
stem cell
Organ
71
connective tissue
26
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
331
AMP
Genome assembly (visualization)
234
hg19
229
GRCh38
4
hg18
Lab
289
AMP-T2D consortium
42
Kyle Gaulton, UCSD
Audit category:
105
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
9
inconsistent control read length
organ_slims!
vein
files.file_type!
bed bed3+
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
331 results
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ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
60
5
1
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
cardiac precursors (cardiac muscle cell)
19
1
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