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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
519
ATAC-seq
83
snATAC-seq
8
DNase-seq
4
FAIRE-seq
Assay category
1909
Transcription
1735
DNA binding
614
DNA accessibility
96
DNA methylation
23
3D chromatin structure
1
DNA sequencing
Date released
101
February, 2023
100
May, 2020
98
May, 2022
82
August, 2021
43
February, 2021
34
May, 2021
26
November, 2019
23
October, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
1
August, 2022
1
November, 2018
1
November, 2020
Available data
445
bed narrowPeak
342
bam
309
bigWig
202
bigBed narrowPeak
bed bed3+
170
bed broadPeak
168
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
Organism
613
Homo sapiens
Biosample type
285
tissue
260
primary cell
39
in vitro differentiated cells
30
cell line
Organ
166
pancreas
107
epithelium
85
kidney
47
blood vessel
47
heart
47
vasculature
45
artery
28
eye
24
liver
22
connective tissue
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
limb
6
adipose tissue
5
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
vein
Project
478
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
258
hg19
229
GRCh38
Lab
344
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
40
inconsistent ontology term
28
audit script error
1
inconsistent replicate
organ_slims!
vein
limb
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
614 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
tissue
kidney
75
6
1
islet of Langerhans
68
7
1
1
coronary artery
36
liver
20
retina
15
+ See 24 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 39 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 5 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
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