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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
2
ATAC-seq
2
DNase-seq
Assay category
112
DNA binding
4
DNA accessibility
Target of assay
63
histone
63
histone modification
49
transcription factor
34
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
70
November, 2017
41
August, 2017
4
October, 2017
1
March, 2019
Available data
3258
bam
3063
bigWig
1712
bed narrowPeak
1593
tsv
1358
fastq
945
bigBed narrowPeak
398
tagAlign
282
bed broadPeak
245
bigBed broadPeak
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
22
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
110
Homo sapiens
Biosample type
58
cell line
37
tissue
20
primary cell
1
in vitro differentiated cells
Organ
58
liver
15
brain
14
pancreas
13
musculature of body
6
epithelium
6
vasculature
4
blood vessel
2
connective tissue
vein
1
adipose tissue
Project
116
AMP
Genome assembly (visualization)
115
hg19
78
GRCh38
Lab
114
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
organ_slims!
vein
limb
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
116 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
13
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
in vitro differentiated cells
adipocyte
1
See all biosamples
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