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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
61
total RNA-seq
46
ATAC-seq
6
single cell RNA-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
82
DNA binding
67
Transcription
46
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
55
histone
55
histone modification
36
broad histone mark
19
control
19
narrow histone mark
8
transcription factor
4
RNA binding protein
Date released
66
February, 2021
50
May, 2019
35
February, 2023
24
October, 2019
9
July, 2019
6
August, 2021
3
February, 2020
3
March, 2020
3
November, 2017
Available data
160
bam
135
bigWig
116
bed narrowPeak
68
tsv
66
bigBed narrowPeak
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
6
tagAlign
3
fastq
2
hdf5
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
199
Homo sapiens
Biosample type
128
tissue
66
cell line
5
primary cell
Organ
917
pancreas
778
liver
657
connective tissue
503
epithelium
485
adipose tissue
323
heart
276
kidney
251
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
199
AMP
Genome assembly (visualization)
168
GRCh38
134
hg19
Lab
199
AMP-T2D consortium
organ_slims!
vein
mammary gland
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
199 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
Hi-C
pCHi-C
tissue
coronary artery
5
1
36
tibial artery
23
1
1
aorta
13
1
4
2
1
1
thoracic aorta
16
2
1
ascending aorta
16
2
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
brain microvascular endothelial cell
3
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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