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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
4
ATAC-seq
1
DNase-seq
Assay category
15
DNA binding
5
DNA accessibility
Target of assay
9
histone
9
histone modification
6
RNA binding protein
6
transcription factor
5
narrow histone mark
4
broad histone mark
Date released
9
June, 2019
5
October, 2018
3
August, 2017
3
October, 2019
Available data
593
bam
570
bigWig
478
tsv
101
fastq
75
bed narrowPeak
28
bigBed narrowPeak
bed bed3+
22
tagAlign
10
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
20
Homo sapiens
Biosample type
9
primary cell
8
tissue
3
in vitro differentiated cells
Organ
353
liver
95
brain
84
pancreas
72
vasculature
70
blood vessel
64
heart
60
epithelium
54
blood
54
bodily fluid
48
limb
26
kidney
24
nerve
21
artery
20
connective tissue
14
musculature of body
12
spleen
vein
8
adipose tissue
2
eye
Project
20
AMP
Genome assembly (visualization)
20
hg19
17
GRCh38
Lab
20
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
organ_slims!
vein
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
ATAC-seq
DNase-seq
primary cell
mesenchymal stem cell
6
cardiac fibroblast
3
tissue
omental fat pad
3
subcutaneous adipose tissue
2
1
adipose tissue
1
1
in vitro differentiated cells
adipocyte
2
1
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