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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
132
ChIP-seq
47
ATAC-seq
8
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
132
DNA binding
47
DNA accessibility
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
38
May, 2024
36
February, 2023
21
May, 2019
14
February, 2021
14
July, 2019
6
October, 2019
5
June, 2019
2
March, 2020
Available data
222
bigWig
211
bam
189
bed narrowPeak
tsv
94
bigBed narrowPeak
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
193
Homo sapiens
Biosample type
173
tissue
14
cell line
6
primary cell
Organ
604
liver
500
pancreas
347
epithelium
252
kidney
225
brain
193
heart
179
connective tissue
155
vasculature
151
blood vessel
101
bone element
84
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
53
musculature of body
52
eye
36
nerve
23
spleen
20
embryo
vein
19
lung
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
193
AMP
Genome assembly (visualization)
164
GRCh38
91
hg19
Lab
155
AMP-T2D consortium
38
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
organ_slims!
vein
files.file_type!
bed bed3+
tsv
BIOSAMPLE
ASSAY
193 results
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ChIP-seq
ATAC-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
heart left ventricle
35
2
4
1
1
coronary artery
5
36
left cardiac atrium
38
heart
14
1
1
1
heart right ventricle
13
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
1
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