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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
2
ATAC-seq
Assay category
27
DNA binding
2
DNA accessibility
Target of assay
23
histone
23
histone modification
13
broad histone mark
10
narrow histone mark
4
transcription factor
Date released
20
August, 2017
7
November, 2017
1
March, 2019
1
October, 2017
Available data
3372
bam
3114
bigWig
1764
bed narrowPeak
1600
tsv
1358
fastq
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
22
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
29
Homo sapiens
Biosample type
23
tissue
6
cell line
Organ
13
musculature of body
8
pancreas
6
liver
2
blood vessel
2
epithelium
2
vasculature
vein
1
adipose tissue
1
brain
1
connective tissue
Project
29
AMP
Genome assembly (visualization)
28
hg19
1
GRCh38
Lab
27
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent control read length
organ_slims!
vein
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
29 results
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Clear Filters
ChIP-seq
ATAC-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
cingulate gyrus
1
subcutaneous abdominal adipose tissue
1
cell line
HepG2
6
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