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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ATAC-seq
8
single cell RNA-seq
Assay category
12
DNA accessibility
8
Transcription
Date released
10
February, 2023
8
February, 2021
1
November, 2018
1
September, 2018
Available data
3372
bam
3114
bigWig
1764
bed narrowPeak
1600
tsv
1358
fastq
1029
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
271
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
22
bedpe bed3+
21
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
20
Homo sapiens
Biosample type
11
tissue
5
in vitro differentiated cells
3
primary cell
1
cell line
Organ
6
connective tissue
5
kidney
4
bone element
4
skeleton
2
liver
1
brain
Project
20
AMP
Genome assembly (visualization)
12
hg19
2
GRCh38
Lab
20
AMP-T2D consortium
Audit category:
5
audit script error
1
inconsistent replicate
organ_slims!
vein
BIOSAMPLE
ASSAY
20 results
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ATAC-seq
single cell RNA-seq
tissue
kidney
5
acetabular part of hip bone
1
brain
1
ilium
1
ischium
1
+ See 2 more…
in vitro differentiated cells
chondrocyte
5
primary cell
pancreatic cell
2
osteoblast
1
cell line
HepG2
1
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